Cold Spring Harbor Teaching Resources

Footnote #1

van Tilborg M.A., Lefstin J.A., Kruiskamp M., Teuben J., Boelens R., Yamamoto K.R., and Kaptein R. 2000. Mutations in the glucocorticoid receptor DNA-binding domain mimic an allosteric effect of DNA. J. Mol. Biol. 301: 947–958.

Footnote #2

Escher D., Bodmer-Glavas M., Barberis A., and Schaffner W. 2000. Conservation of glutamine-rich transactivation function between yeast and humans. Mol. Cell. Biol. 20: 2774–2782.

Footnote #3

Nevado J., Gaudreau L., Adam M., and Ptashne M. 1999. Transcriptional activation by artificial recruitment in mammalian cells. Proc. Natl. Acad. Sci. 96: 2674–2677.

Dorris D.R. and Struhl K. 2000. Artificial recruitment of TFIID, but not RNA polymerase II holoenzyme, activates transcription in mammalian cells. Mol. Cell. Biol. 20: 4350–4358.

Footnote #4

Cormack B.P., Strubin M., Stargell L.A., and Struhl K. 1994. Conserved and nonconserved functions of the yeast and human TATA-binding proteins. Genes Dev. 8: 1335–1343.

Footnote #5

Holmes M.C. and Tjian R. 2000. Promoter-selective properties of the TBP-related factor TRF1. Science 288: 867–870.

Footnote #6

Ito M., Yuan C.X., Okano H.J., Darnell R.B., and Roeder R.G. 2000. Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action. Mol. Cell 5: 683–693.

Footnote #7

Dotson M.R., Yuan C.X., Roeder R.G., Myers L.C., Gustafsson C.M., Jiang Y.W., Li Y., Kornberg R.D., and Asturias F.J. 2000. Structural organization of yeast and mammalian mediator complexes. Proc. Natl. Acad. Sci. 97: 14307–14310.

Wang G., Cantin G.T., Stevens J.L., and Berk A.J. 2001. Characterization of mediator complexes from HeLa cell nuclear extract. Mol. Cell. Biol. 21: 4604–4613.

Ito M., Yuan C.X., Malik S., Gu W., Fondell J.D., Yamamura S., Fu Z.Y., Zhang X., Qin J., and Roeder R.G. 1999. Identity between TRAP and SMCC complexes indicates novel pathways for the function of nuclear receptors and diverse mammalian activators. Mol. Cell 3: 361–370.

Malik S. and Roeder R.G. 2000. Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells. Trends Biochem. Sci. 25: 277–283.

Footnote #8

Agalioti T., Lomvardas S., Parekh B., Yie J., Maniatis T., and Thanos D. 2000. Ordered recruitment of chromatin modifying and transcription factors to the IFN-beta promoter. Cell 103: 667–678.

Footnote #9

Blair W.S., Fridell R.A., and Cullen B.R. 1996. Synergistic enhancement of both initiation and elongation by acidic transcription activation domains. EMBO J. 15: 1658–1665.

Footnote #10

Nibu Y., Zhang H., and Levine M. 2001. Local action of long-range repressors in the Drosophila embryo. EMBO J. 20: 2246–2253.

Footnote #13

Senger K., Merika M., Agalioti T., Yie J., Escalante C.R., Chen G., Aggarwal A.K., and Thanos D. 2000. Gene repression by coactivator repulsion. Mol. Cell 6: 931–937.

Footnote #14

Thanos D. and Maniatis T. 1995. Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell 83: 1091–1100.

Footnote #15

Halfon M.S., Carmena A., Gisselbrecht S., Sackerson C.M., Jimenez F., Baylies M.K., and Michelson A.M. 2000. Ras pathway specificity is determined by the integration of multiple signal-activated and tissue-restricted transcription factors. Cell 103: 63–74.

Footnote #16

Morcillo P., Rosen C., Baylies M.K., and Dorsett D. 1997. Chip, a widely expressed chromosomal protein required for segmentation and activity of a remote wing margin enhancer in Drosophila. Genes Dev. 11: 2729–2740.

Torigoi E., Bennani-Baiti I.M., Rosen C., Gonzalez K., Morcillo P., Ptashne M., and Dorsett D. 2000. Chip interacts with diverse homeodomain proteins and potentiates bicoid activity in vivo. Proc. Natl. Acad. Sci. 97: 2686–2691.

Muravyova E., Golovnin A., Gracheva E., Parshikov A., Belenkaya T., Pirrotta V., and Georgiev P. 2001. Loss of insulator activity by paired Su(Hw) chromatin insulators. Science 291: 495–498.

Cai H.N. and Shen P. 2001. Effects of cis arrangement of chromatin insulators on enhancer-blocking activity. Science 291: 493–495.

Footnote #19

Fiering S., Whitelaw E., and Martin D.I. 2000. To be or not to be active: The stochastic nature of enhancer action. Bioessays 22: 381–387.

Walters M.C., Fiering S., Eidemiller J., Magis W., Groudine M., and Martin D.I. 1995. Enhancers increase the probability but not the level of gene expression. Proc. Natl. Acad. Sci. 92: 7125–7129.

Footnote #20

Andrulis E.D., Neiman A.M., Zappulla D.C., and Sternglanz R. 1998. Perinuclear localization of chromatin facilitates transcriptional silencing (erratum in Nature [1998] 395: 525). Nature 394: 592–595.

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